Welcome to the NMDC Workflow documentation!

Contents:

• NMDC Workflows
  • General Guidelines
  • Execution Environment
• Metagenomic Workflow
  • Workflow Overview
  • Workflow Availability
  • Workflow Dependencies
  • Point of contact
• The Read-based Taxonomy Classification (v1.0.8)
  • Workflow Overview
  • Workflow Availability
  • Workflow Dependencies
  • Version History
  • Point of contact
• Reads QC Workflow (v1.0.13)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample dataset(s)
  • Input
  • Output
  • Version History
  • Point of contact
• Metagenome Assembly Workflow (v1.0.7)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample dataset(s)
  • Input
  • Output
  • Version History
  • Point of contact
• Metagenome Annotation Workflow (v1.1.4)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution (recommendations are in bold):
  • Hardware Requirements:
  • Workflow Dependencies
  • Sample datasets
  • Inputs
  • Output
  • Structure of GFF and tab-delimited text files
  • Version History
  • Point of contact
• Metagenome Assembled Genomes Workflow (v1.3.14)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample dataset(s)
  • Input
  • Output
  • Version History
  • Point of contact
• Metatranscriptome Workflow (v0.0.6)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution (recommendations are in bold):
  • Workflow Dependencies
  • Sample datasets
  • Version History
  • Points of contact
• MetaT Reads QC Workflow (v0.0.7)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample datasets
  • Inputs
  • Output
  • Version History
  • Point of contact
• MetaT Assembly Workflow (v0.0.2)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample datasets
  • Inputs
  • Output
  • Version History
  • Point of contact
• MetaT Read Counts Workflow (v0.0.5)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution (recommendations are in italics):
  • Hardware Requirements:
  • Workflow Dependencies
  • Sample datasets
  • Input
  • Output
  • Description of IMG metatranscriptome data file
  • Version History
  • Point of contact
• Metaproteomic Workflow (v1.2.1)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Sample Dataset
  • Input
  • Output
  • Version History
  • Point of contact
• Metabolomics Workflow
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Test datasets
  • Version History
  • Point of contact
• Natural Organic Matter Workflow
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Hardware Requirements
  • Workflow Dependencies
  • Test datasets
  • Inputs
  • Outputs
  • Version History
  • Point of contact
• Lipidomics Workflow (v1.1.0)
  • Workflow Overview
  • Workflow Availability
  • Requirements for Execution
  • Sample datasets
  • Execution Details
  • Version History
  • Point of contact